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1

Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis

Abhyankar, S., Demner-Fushman, D., Callaghan, F. M., McDonald, C. J.

Journal:

Journal of the American Medical Informatics Association

Year:

2014

Language:

english

File:

PDF, 470 KB

english, 2014

2

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment

Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch

Journal:

Journal of the American Society for Information Science and Technology

Year:

2006

Language:

english

File:

PDF, 376 KB

english, 2006

3

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text

Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson

Journal:

Journal of Biomedical Informatics

Year:

2010

Language:

english

File:

PDF, 290 KB

english, 2010

4

Multimodal biomedical image indexing and retrieval using descriptive text and global feature mapping

Simpson, Matthew S., Demner-Fushman, Dina, Antani, Sameer K., Thoma, George R.

Journal:

Information Retrieval

Year:

2014

Language:

english

File:

PDF, 878 KB

english, 2014

5

Literature-based biomedical image classification and retrieval

Simpson, Matthew S., You, Daekeun, Rahman, Md Mahmudur, Xue, Zhiyun, Demner-Fushman, Dina, Antani, Sameer, Thoma, George

Journal:

Computerized Medical Imaging and Graphics

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

6

Comparative effectiveness research designs: an analysis of terms and coverage in Medical Subject Headings (MeSH) and Emtree

Bekhuis, Tanja, Demner-Fushman, Dina, Crowley, Rebecca S.

Journal:

Journal of the Medical Library Association JMLA

Year:

2013

Language:

english

File:

PDF, 920 KB

english, 2013

7

An image feature-based approach to automatically find images for application to clinical decision support

R. Joe Stanley, Soumya De, Dina Demner-Fushman, Sameer Antani, George R. Thoma

Journal:

Computerized Medical Imaging and Graphics

Year:

2011

Language:

english

File:

PDF, 565 KB

english, 2011

8

Interactive publication: The document as a research tool

George R. Thoma, Glenn Ford, Sameer Antani, Dina Demner-Fushman, Michael Chung, Matthew Simpson

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2010

Language:

english

File:

PDF, 525 KB

english, 2010

9

Methods for automatically evaluating answers to complex questions

Jimmy Lin, Dina Demner-Fushman

Journal:

Information Retrieval

Year:

2006

Language:

english

File:

PDF, 521 KB

english, 2006

10

Automatically Identifying Health Outcome Information in MEDLINE Records

Dina Demner-Fushman, Barbara Few, Susan E. Hauser, George Thoma

Journal:

Journal of the American Medical Informatics Association

Year:

2006

Language:

english

File:

PDF, 276 KB

english, 2006

11

Essie: A Concept-based Search Engine for Structured Biomedical Text

Nicholas C. Ide, Russell F. Loane, Dina Demner-Fushman

Journal:

Journal of the American Medical Informatics Association

Year:

2007

Language:

english

File:

PDF, 368 KB

english, 2007

12

Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE

Charles A. Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch

Journal:

Journal of the American Medical Informatics Association

Year:

2007

Language:

english

File:

PDF, 207 KB

english, 2007

13

Annotation and retrieval of clinically relevant images

Dina Demner-Fushman, Sameer Antani, Matthew Simpson, George R. Thoma

Journal:

International Journal of Medical Informatics

Year:

2009

Language:

english

File:

PDF, 470 KB

english, 2009

14

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 612 KB

english, 2009

15

What can natural language processing do for clinical decision support?

Dina Demner-Fushman, Wendy W. Chapman, Clement J. McDonald

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 612 KB

english, 2009

16

The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers

Casey Lynnette Overby, Peter Tarczy-Hornoch, Dina Demner-Fushman

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 387 KB

english, 2009

17

Themes in biomedical natural language processing: BioNLP08

Dina Demner-Fushman, Sophia Ananiadou, K Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie Webber

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 182 KB

english, 2008

18

SPIE Proceedings [SPIE Electronic Imaging 2008 - San Jose, CA (Sunday 27 January 2008)] Document Recognition and Retrieval XV - Exploring use of images in clinical articles for decision support in evidence-based medicine

Antani, Sameer, Demner-Fushman, Dina, Li, Jiang, Srinivasan, Balaji V., Thoma, George R., Yanikoglu, Berrin A., Berkner, Kathrin

Year:

2008

Language:

english

File:

PDF, 610 KB

english, 2008

19

Screening nonrandomized studies for medical systematic reviews: A comparative study of classifiers

Bekhuis, Tanja, Demner-Fushman, Dina

Journal:

Artificial Intelligence in Medicine

Year:

2012

Language:

english

File:

PDF, 377 KB

english, 2012

20

A mutation-centric approach to identifying pharmacogenomic relations in text

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 256 KB

english, 2012

21

Standardizing clinical laboratory data for secondary use

Swapna Abhyankar, Dina Demner-Fushman, Clement J. McDonald

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 771 KB

english, 2012

22

Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians

Susan E. Hauser, Dina Demner-Fushman, Joshua L. Jacobs, Susanne M. Humphrey, Glenn Ford, George R. Thoma

Journal:

Journal of the American Medical Informatics Association

Year:

2007

Language:

english

File:

PDF, 527 KB

english, 2007

23

Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence

Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes

Journal:

Journal of the American Medical Informatics Association

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

24

Image retrieval from scientific publications: Text and image content processing to separate multipanel figures

Apostolova, Emilia, You, Daekeun, Xue, Zhiyun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Journal:

Journal of the American Society for Information Science and Technology

Year:

2013

Language:

english

File:

PDF, 735 KB

english, 2013

25

Multimodal biomedical image retrieval using hierarchical classification and modality fusion

Rahman, Md Mahmudur, You, Daekeun, Simpson, Matthew S., Antani, Sameer K., Demner-Fushman, Dina, Thoma, George R.

Journal:

International Journal of Multimedia Information Retrieval

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

26

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista (Orlando Area), Florida, USA (Saturday 9 February 2013)] Medical Imaging 2013: Advanced PACS-based Imaging Informatics and Therapeutic Applications - Text- and content-based biomedical image modality classification

You, Daekeun, Rahman, Md Mahmudur, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R., Law, Maria Y., Boonn, William W.

Year:

2013

Language:

english

File:

PDF, 819 KB

english, 2013

27

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - Burlingame, California, USA (Sunday 3 February 2013)] Document Recognition and Retrieval XX - Annotating image ROIs with text descriptions for multimodal biomedical document retrieval

You, Daekeun, Simpson, Matthew, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R., Zanibbi, Richard, Coüasnon, Bertrand

Year:

2013

Language:

english

File:

PDF, 779 KB

english, 2013

28

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Francisco, California, USA (Sunday 2 February 2014)] Document Recognition and Retrieval XXI - A contour-based shape descriptor for biomedical image classification and retrieval

Coüasnon, Bertrand, Ringger, Eric K., You, Daekeun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

29

High vitamin B12 levels are not associated with increased mortality risk for ICU patients after adjusting for liver function: A cohort study

Callaghan, Fiona M., Leishear, Kira, Abhyankar, Swapna, Demner-Fushman, Dina, McDonald, Clement J.

Journal:

Year:

2014

Language:

english

File:

PDF, 247 KB

english, 2014

30

Evaluating performance of biomedical image retrieval systems—An overview of the medical image retrieval task at ImageCLEF 2004–2013

Kalpathy-Cramer, Jayashree, de Herrera, Alba García Seco, Demner-Fushman, Dina, Antani, Sameer, Bedrick, Steven, Müller, Henning

Journal:

Computerized Medical Imaging and Graphics

Year:

2015

Language:

english

File:

PDF, 927 KB

english, 2015

31

Interactive cross and multimodal biomedical image retrieval based on automatic region-of-interest (ROI) identification and classification

Rahman, Md Mahmudur, You, Daekeun, Simpson, Matthew S., Antani, Sameer K., Demner-Fushman, Dina, Thoma, George R.

Journal:

International Journal of Multimedia Information Retrieval

Year:

2014

Language:

english

File:

PDF, 3.90 MB

english, 2014

32

Frontiers of biomedical text mining: current progress

Zweigenbaum, P., Demner-Fushman, D., Yu, H., Cohen, K. B.

Journal:

Briefings in Bioinformatics

Year:

2007

Language:

english

File:

PDF, 322 KB

english, 2007

33

Lower short- and long-term mortality associated with overweight and obesity in a large cohort study of adult intensive care unit patients

Swapna Abhyankar,Kira Leishear,Fiona M Callaghan,Dina Demner-Fushman…

Journal:

Critical Care (BioMed Central)

Year:

2012

Language:

english

File:

PDF, 266 KB

english, 2012

34

[IEEE 2007 Seventh IEEE International Conference on Data Mining - Workshops (ICDM Workshops) - Omaha, NE, USA (2007.10.28-2007.10.31)] Seventh IEEE International Conference on Data Mining Workshops (ICDMW 2007) - Automatically Finding Images for Clinical Decision Support

Demner-Fushman, Dina, Antani, Sameer, Siadat, Mohammad-Reza, Soltanian-Zadeh, Hamid, Fotouhi, Farshad, Elisevich, and Kost

Year:

2007

Language:

english

File:

PDF, 239 KB

english, 2007

35

[IEEE 2011 International Conference on Document Analysis and Recognition (ICDAR) - Beijing, China (2011.09.18-2011.09.21)] 2011 International Conference on Document Analysis and Recognition - Detecting Figure-Panel Labels in Medical Journal Articles Using MRF

You, Daekeun, Antani, Sameer, Demner-Fushman, Dina, Govindaraju, Venu, Thoma, George R.

Year:

2011

Language:

english

File:

PDF, 2.41 MB

english, 2011

36

[IEEE 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS) - New York, NY, USA (2014.5.27-2014.5.29)] 2014 IEEE 27th International Symposium on Computer-Based Medical Systems - Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study

You, Daekeun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 453 KB

english, 2014

37

[IEEE 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB) - La Jolla, CA, USA (2012.09.27-2012.09.28)] 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology - An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification

Rahman, Mahmudur, You, Daekeun, Simpson, Matthew S., Antani, Sameer K., Demner-Fushman, Dina, Thoma, George R.

Year:

2012

Language:

english

File:

PDF, 200 KB

english, 2012

38

[IEEE 36th Annual Hawaii International Conference on System Sciences, 2003. Proceedings of the - Big Island, HI, USA (2003.01.9-2003.01.9)] 36th Annual Hawaii International Conference on System Sciences, 2003. Proceedings of the - The effect of bilingual term list size on dictionary-based cross-language information retrieval

Demner-Fushman, D., Oard, D.W.

Year:

2003

Language:

english

File:

PDF, 384 KB

english, 2003

39

[IEEE 2013 IEEE International Conference on Healthcare Informatics (ICHI) - Philadelphia, PA, USA (2013.09.9-2013.09.11)] 2013 IEEE International Conference on Healthcare Informatics - Classification of CT Figures in Biomedical Articles Based on Body Segments

Xue, Zhiyun, Antani, Sameer, Long, L. Rodney, Demner-Fushman, Dina, Thoma, George R.

Year:

2013

Language:

english

File:

PDF, 629 KB

english, 2013

40

[IEEE 2014 IEEE Winter Conference on Applications of Computer Vision (WACV) - Steamboat Springs, CO, USA (2014.3.24-2014.3.26)] IEEE Winter Conference on Applications of Computer Vision - Integrating visual words as bunch of n-grams for effective biomedical image classification

Pedrosa, Glauco V., Rahman, Md Mahmudur, Antani, Sameer K., Demner-Fushman, Dina, Long, L. Rodney, Traina, Agma J. M.

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

41

[IEEE Comput. Soc Proceedings. 17th IEEE Symposium on Computer-Based Medical Systems - Bethesda, MD, USA (24-25 June 2004)] Proceedings. 17th IEEE Symposium on Computer-Based Medical Systems - A testbed system for mobile point-of-care information delivery

Hauser, S.E., Demner-Fushman, D., Ford, G., Thoma, G.R.

Year:

2004

Language:

english

File:

PDF, 298 KB

english, 2004

42

[IEEE 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS) - New York, NY, USA (2014.5.27-2014.5.29)] 2014 IEEE 27th International Symposium on Computer-Based Medical Systems - Body Segment Classification for Visible Human Cross Section Slices

Xue, Zhiyun, Antani, Sameer, Long, L. Rodney, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 481 KB

english, 2014

43

[IEEE 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS) - New York, NY, USA (2014.5.27-2014.5.29)] 2014 IEEE 27th International Symposium on Computer-Based Medical Systems - An MRF Model for Biomedical Image Segmentation

You, Daekeun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 453 KB

english, 2014

44

A decade of community-wide efforts in advancing medical image understanding and retrieval

Demner-Fushman, Dina, Antani, Sameer, Kalpathy-Cramer, Jayashree, Müller, Henning

Journal:

Computerized Medical Imaging and Graphics

Year:

2015

Language:

english

File:

PDF, 208 KB

english, 2015

45

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Biomedical image segmentation for semantic visual feature extraction

You, Daekeun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 961 KB

english, 2014

46

OUTSTANDING POSTER–RESEARCH

Seckman, Charlotte, Fisher, Cheryl, Demner-Fushman, Dina

Journal:

CIN Computers Informatics Nursing

Year:

2013

Language:

english

File:

PDF, 112 KB

english, 2013

47

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Francisco, California, USA (Sunday 2 February 2014)] Document Recognition and Retrieval XXI - Extraction and labeling high-resolution images from PDF documents

Coüasnon, Bertrand, Ringger, Eric K., Chachra, Suchet K., Xue, Zhiyun, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 925 KB

english, 2014

48

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, USA (Saturday 15 February 2014)] Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations - Biomedical image representation and classification using an entropy weighted probabilistic concept feature space

Law, Maria Y., Cook, Tessa S., Rahman, Md Mahmudur, Antani, Sameer K., Demner-Fushman, Dinna, Thoma, George R.

Year:

2014

Language:

english

File:

PDF, 472 KB

english, 2014

49

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Jose, CA (Sunday 18 January 2009)] Document Recognition and Retrieval XVI - Figure content analysis for improved biomedical article retrieval

You, Daekeun, Apostolova, Emilia, Antani, Sameer, Demner-Fushman, Dina, Thoma, George R., Berkner, Kathrin, Likforman-Sulem, Laurence

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

50

SPIE Proceedings [SPIE SPIE Medical Imaging - Orlando, Florida, United States (Saturday 21 February 2015)] Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations - Extraction of endoscopic images for biomedical figure classification

Cook, Tessa S., Zhang, Jianguo, Xue, Zhiyun, You, Daekeun, Chachra, Suchet, Antani, Sameer, Long, L. R., Demner-Fushman, Dina, Thoma, George R.

Year:

2015

Language:

english

File:

PDF, 2.04 MB

english, 2015

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